Rhizobia–Soybean Interactions Laboratory

Interdisciplinary study of rhizobia–soybean interactions to improve inoculation and biological nitrogen fixation.

Overview

The Rhizobia–Soybean Interactions Laboratory (LIRyS) is an interdisciplinary group devoted to studying interactions between rhizobia and soybean. Because soybean is Argentina’s most widely cultivated crop, we consider that every contribution aimed at improving its sustainability can help preserve large areas of soil.

Soybean is cultivated on approximately 20 million hectares in Argentina. Because of its high nitrogen demand, this crop could significantly reduce soil nitrogen fertility if it were not able to fix atmospheric nitrogen through its symbiotic association with rhizobia.

Biological nitrogen fixation requires inoculants formulated with high-quality rhizobia. These microorganisms must interact effectively with soybean roots to establish infection and form functional nodules. Optimizing this process depends on multiple soil factors, including texture, structure, water content and pH, as well as on the resident microbiota. Among its members, naturalized rhizobia can compete with inoculated strains for root infection sites.

To address this problem, we integrate knowledge and methods from Agronomy, Biotechnology, Biochemistry, Bioinformatics, Evolutionary Biology and Physics. These approaches converge in the study of soil microbial population complexity, rhizobial motility and metabolism under different nutritional and stress conditions, plant responses and inoculation strategies.

The laboratory also maintains a strong commitment to training highly qualified human resources at undergraduate and graduate levels. In this context, six researchers have completed their doctorates and seven others are currently carrying out their doctoral theses at LIRyS.

Research lines

Mobility of Bradyrhizobium spp. in soil

Development of methods to understand how rhizobia move within the complex structure of soil.

Soil is a dark, tortuous and irregular environment where bacterial movement cannot be observed directly at high resolution. In addition, its water content varies in time and space: rhizobia swim by means of their flagella when water is available and apparently move near the internal surfaces of pores.

We use specific mutants and experimental designs that simulate soil conditions to measure dispersal rates, movement characteristics and energy used.

Participants: María Julia Althabegoiti and Aníbal R. Lodeiro.

Genetic determinants and evolution of flagellar systems in Bradyrhizobium

Study of rhizobial motility as a factor in colonization and competition for nodulation.

The motility of species used in biofertilizers can influence their ability to colonize roots and compete for nodulation. In the laboratory, artificial selection yielded a more motile mutant that proved more competitive in the field and increased soybean crop yield.

We currently analyze the genetic changes that led to that phenotype, including those that did not occur directly in genes related to the flagellum or chemotaxis.

Participants: María Julia Althabegoiti and Aníbal R. Lodeiro.

Genomic–functional study of the flagellar systems of Bradyrhizobium diazoefficiens

Characterization of the two flagellar systems and of the signals that regulate their expression.

We genomically analyze the genes encoding the two flagellar systems expressed by B. diazoefficiens and study how they respond to environmental signals, such as carbon source and medium viscosity.

We also investigate the involvement of histidine kinases and of the second messenger c-di-GMP in the regulation of these systems, combining genetic, biochemical and functional approaches.

Participants: Elías Mongiardini, Julián Iglesias and Aníbal R. Lodeiro.

High-efficiency granulated biofertilizers for soybean inoculation in the seeding furrow

Development of improved inoculants to increase the productivity of soybean crops.

We work on a granulated biofertilizer that allows better distribution of rhizobia in the seeding furrow and favors the establishment of symbiosis.

The development combines symbiotic strains with plant growth–promoting bacteria, seeking an efficient formulation for direct application in agricultural systems.

Participants: Julieta Pérez Giménez and Aníbal R. Lodeiro.

Stringent response in Bradyrhizobium diazoefficiens and its relationship with soybean symbiosis

Analysis of the bacterial response to nutrient scarcity and of its effects on symbiosis.

We study the stringent response of B. diazoefficiens to nutritional limitation and its influence on the symbiotic interaction with soybean.

The project combines comparative transcriptomic and proteomic studies in mutants of the rsh gene with functional validation of genes involved in the plant–bacterium interaction.

Participants: Ornella Faldutti and Julieta Pérez Giménez.

Artificial ecosystem selection for the improvement of soybean inoculants

Selection of rhizosphere communities and microbial consortia to improve biological nitrogen fixation.

We explore artificial ecosystem selection as a strategy to identify rhizosphere communities with functional traits beneficial for soybean.

Symbiotic consortia capable of sustaining more efficient nitrogen fixation are characterized, with the aim of developing more effective and sustainable bioinoculants.

Participants: Damián Brignoli, Julieta Pérez Giménez and Aníbal R. Lodeiro.

Two-component systems and abiotic stress in Bradyrhizobium diazoefficiens

Study of the regulatory circuits that enable adaptation to environmental stresses and sustain symbiotic nitrogen fixation.

We analyze the Two-Component Systems of B. diazoefficiens involved in the response to different abiotic stresses and their relationship with symbiotic efficiency in soybean plants.

The work integrates biochemical, genetic, molecular biology and omics strategies to understand how the physiological and metabolic conditions of rhizobia modulate the interaction. In the future, this knowledge may be applied to the development and formulation of better inoculants.

Participants: Silvina Laura López García and Juliana Belén Heredia.

Team

Institutional representation

Since October 2025, Dr Aníbal R. Lodeiro has served as the representative of the National University of La Plata on the National Advisory Commission on Agricultural Biotechnology (CONABIA), an interdisciplinary commission that evaluates applications related to agricultural biosafety and issues non-binding technical-scientific opinions.

Projects and funding

ProjectCode / periodEntity
Studies of flagellar systems in the genus Bradyrhizobium: diversity and functionPICT 2017-1334 · 2017–present · 2017–presentFONCyT–ANPCyT
Stringent response in Bradyrhizobium diazoefficiens and its relation to soybean symbiosisPICT 2016-0604 · 2017–present · 2017–presentFONCyT–ANPCyT
Genomic-functional characterization of the subpolar flagellum of Bradyrhizobium diazoefficiensPICT 2015-1467 · 2016–present · 2016–presentFONCyT–ANPCyT
Expression of the two flagellar systems of Bradyrhizobium japonicumPIP 2013-112-201201-00386-CO · 2014–present · 2014–presentCONICET
Biofertilizers for sustainable soybean agriculturePICT 2013-2542 · 2014–present · 2014–presentFONCyT–ANPCyT
Validación experimental de determinantes involucrados en la diferenciación de las bacterias en bacteroides para una simbiosis fijadora de nitrógeno eficiente. Lead: Gonzalo Arturo Torres Tejerizo. Source: Williams Foundation — Complementary Funds for Research 2024. https://fundacionwilliams.org.ar/concurso-fondos-complementarios-para-la-investigacion-2024/Williams Foundation · Complementary Funds 2024Williams Foundation

Selected scientific output

  • Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase Is Required in Bradyrhizobium diazoefficiens for Efficient Soybean Root Colonization and Competition for NodulationBalda R. S. et al. · Plants (Basel) 13(17):2362 · 2024
  • Quality control of Bradyrhizobium inoculant strains: detection of nosZ and correlation of symbiotic efficiency with soybean leaf chlorophyll levelsBrignoli D. et al. · Frontiers in Agronomy 6:1336433 · 2024 · doi: 10.3389/fagro.2024.1336433
  • A Stringent-Response-Defective Bradyrhizobium diazoefficiens Strain Does Not Activate the Type 3 Secretion System, Elicits an Early Plant Defense Response, and Circumvents NH4NO3-Induced Inhibition of NodulationPérez-Giménez J. et al. · Appl Environ Microbiol 87(9):e02989-20 · 2021
  • Dual Control of Flagellar Synthesis and Exopolysaccharide Production by FlbD-FliX Class II Regulatory Proteins in Bradyrhizobium diazoefficiensDardis C. et al. · J Bacteriol 203(7):e00403-20 · 2021
  • Coinoculation of soybean plants with Bradyrhizobium japonicum and Trichoderma harzianum: Coexistence of both microbes and relief of nitrate inhibition of nodulationIturralde E. T. et al. · Biotechnol Reports 26:e00461 · 2020

Collaborations

  • Alejandro Perticari (IMYZA, INTA)
  • Anke Becker (Synmikro, Philipps Universität Marburg, Germany)
  • Augusto Melgarejo (Faculty of Engineering, UNLP)
  • César Arrese-Igor (Univ. Pública de Navarra, Spain)
  • Daniel Garrido (Universidad Autónoma de Madrid, Spain)
  • José Julio Ortega-Calvo (IRNAS-CSIC, Seville, Spain)
  • María Jesús Delgado (Estación Experimental del Zaidín, Granada, Spain)
  • Verónica Marconi (FAMAF-IFEG, UNC–CONICET)

Capabilities, developments and transfer

Molecular characterization of soybean-nodulating rhizobia and symbiotic efficiency assessment.

Development and evaluation of biofertilizers and inoculants for sustainable agriculture.

Studies of bacterial mobility, flagella and stress response under simulated soil conditions.

Institutional contact

Institutional channels of the Institute.